Get Permission Sumangala B, Sharlee R, and Shetty N S: Identification of Enterococcus.faecalis and E.faecium among Enterococci isolated from clinical samples in a teaching hospital Mandya Institute of Medical Sciences, Mandya


Introduction

Enterococci are gram-positive organism that occurs in singles, pairs, and short chains. The cells look like coccobacilli if the Gram stain is prepared from agar plate growth. They are characterized by Lance field classification as group D streptococcus.1

Enterococci are facultative anaerobes that are able to grow under extreme conditions including 6.5% NaCl, high pH, 40% bile salts, and a temperature range of 10ºC-45ºC.1

The most accurate way to identify Enterococcus sp is to demonstrate that unknown is catalase-negative gram positive coccus, PYR (an abbreviation for L-pyrrolidonyl-β-naphthylamide) and LAP (leucine-beta-naththylamide) positive, bile esculin test, Arginine hydrolysis, mannitol fermentation positive.1

Enterococci are common commensals found in gastrointestinal, genital and urethral tract. It can be found in water, plants, soil, food, animals, birds and insects.2

Enterococus infections were considered to be acquired from the patient’s own normal flora. It has emerged as nosocomial pathogen because of the development of antimicrobial resistance.2

Common clinical infections caused by Enterococci are urinary tract infections, endocarditis, pelvic infections, bacteremia and intra-abdominal, less commonly they can cause wound and soft tissue infections, meningitis, and respiratory infections.1

Enterococci are intrinsically resistant to antibiotics like penicillinase susceptible penicillin, penicillinase resistant penicillin, nalidixic acid, cephalosporin, clindamycin and aminoglycoside. E.faecalis is the predominant species implicated in infection followed by E.faecium.3

Recent evidence suggests that the prevalence vancomycin-resistant E. faecium is increasing. The resistance to vancomycin and ampicillin, is commonly associated with E. faecium than with E. faecalis  Speciation of Enterococcus is important because vancomycin which is the drug of choice in Enterococcus infections cannot be used in faecium.3

The present study was undertaken for speciation of Enterococci and assessment of their antibiogram that will be helpful in choosing optimal empiric therapy and formulate antimicrobial policy.

Materials and Methods

A Prospective observational study was conducted in the Department of Microbiology culture laboratory in Mandya Institute of Medical Sciences, Mandya after getting ethical clearance from the institute.

Study period

Six months (July 2018 to December 2018).

Sample size

100.

Inclusion criteria

Enterococcus isolated from clinical sample like pus, urine, blood and sterile body fluid.

Exclusion criteria

Enterococcus isolated from clinical sample like sputum, stool, throat & GIT (Gastrointestinal tract).

Methods

Pus and Urine samples received in Microbiology laboratory for culture and sensitivity were inoculated onto MacConkey agar and blood agar and incubated at 37ºC for 18-24 hours. Inoculated culture plates were observed for growth and samples were processed according to CLSI standards.4 Organisms which exhibited these characters such as catalase negative, gram positive, bile esculin agar positive, ability to grow in the presence of 6.5% sodium chloride and heat tolerance test were identified as Enterococcus.4

Speciation of Enterococci was carried out by Hippurate hydrolysis test and sugar fermentation test. a) Hippurate hydrolysis test- 0.1% solution of sodium hippurate media was prepared, a loopful of solid growth from blood agar plate were inoculated and incubate at 37ºC for 2 hours. 0.2ml of Ninhydrin solution was added and incubated further for 10 minutes at 37ºC. Test tube which turns Purple indicates glycine production on hydrolysis of hippurate.

b) Sugar fermtation test was carried out for Arginine, Sorbitol and Pyruvate. Enterococcus which fermented sorbitol and pyruvate was considered faecalis and isolate which fermented Arginine was considered faecium.2, 4

Antibiotic susceptibility testing was performed by Kirby-Bauer disc diffusion method according to CLSI guidelines.4

The following antibiotics were tested- Ampicillin (10μg), Erythromycin (15μg), Chloramphenicol (30μg), Tetracycline (30μg), Ciprofloxacin (5μg), High level Gentamycin (120μg), Linezolid (30μg), Vancomycin (30μg),Norfloxacin (10μg), Nitrofurantoin (300μg), Nalidixic acid (30μg).4

Results

Out of 42 Enterococcal isolates maximum were isolated from urine 25 (59.52%) followed by pus11 (26.19%), blood 4 (9.52%) and sterile body fluids 2(4.77%) as shown in(Table 2). Out of 42 Enterococcal isolates Enterococcu. faecalis were 37(88.1%) and Enterococcus. faecium were 5(11.9%). Among the gender distribution, Out of 42 Enterococcal isolates majority 23 (54.77%) were males and 19(45.23%) were females as shown in-(Table 1).

Table 1

Gender wise distribution of Enterococcus species

Gender

Total

Percentage

Male (n=42)

23

54.77%

Female (n=42)

19

45.23%

Table 2

Distribution of Enterococcus species among clinical sample

S. No

Samples

Total (n=42)

1

Urine

25 (59.52%)

2

Pus

11 (26.19%)

3

Blood

4 (9.52%)

4

Sterile fluid

2 (4.77%)

Table 3

Antibiotic profile of Enterococcus species among urine samples

Antibiotics

E. faecalis (n=31)

E. faecium (n=11)

All samples

Susceptible

Resistant

Susceptible

Resistant

Penicillin-G

2(14.71%)

29(85.29%)

3(27.28%)

8(72.72%)

Ampicillin

21(61.30%)

12(38.70%)

5(45.46%)

6(54.54%)

High level gentamicin

24(77.41%)

7(22.59%)

4(36.37%)

7(63.63%)

Erythromycin

11(35.48%)

20(64.51%)

5(45.46%)

6(54.54%)

Chloramphenicol

15(48.39%)

16(51.61%)

7(63.63%)

5(45.46%)

Teicoplanin

27(87.09%)

6(12.91%)

10(90.90%)

1(9.1%)

Ciprofloxacin

14(45.16%)

17(54.84%)

7(63.63%)

5(45.46%)

Tetracycline

6(19.36%)

25(80.64%)

3(27.28%)

8(72.72%)

Linezolid

100(100%)

0(0%)

100(100%)

0(0%)

Vancomycin

100(100%)

0(0%)

9(82%)

2(18%)

Extra drugs for Urinary isolates (n=25)

E. faecalis (n=19)

E. faecium (n=6)

Nitrofurantoin

17(89.47%)

2(10.53%)

5(83.33%)

1(16.67%)

Norfloxacin

15(78.94%)

4(21.06%)

4(66.66%)

2(33.34%)

Nalidixic acid

16(84.21%)

3(15.79%)

4(66.66%)

2(33.34%)

Out of 42 isolates, all were sensitive to Linezolid, followed by Vancomycin showing 100% sensitive to faecalis and 82% sensitive to faecium, Teichoplanin showing 87.09% for E.faecalis and 90.90% for E.faecium. E.faecalis showed maximum resistance for Penicillin G with 85.29%, followed by Tetracycline with 80.64%. E.faecium also showed maximum resistant for Penicillin G with 72.72% and Tetracycline with 80.64%. Urinary drug like Norfloxacin showed maximum resistance for both the species and Nitrofurantoin were sensitive as shown in the(Table 3).

Discussion

Escherichia coli, Pseudomonas and Staphylococcus remain to be the foremost cause of nosocomial infections. Enterococcus holding second place according to the data collected from CDC.5 The spectrum of disease caused by Enterococcus varies from soft tissue infection, wound infection, UTI to bacteremia. It remains to be the second most cause of UTI and stands third place in causing bacteremia.5

In our study we observed maximum number of organisms were isolated from urine sample followed by pus sample, which is similar to those found in other studies.6, 7, 8, 9, 10, 11

In the present study female patients were affected maximum (54.77%) when compared to male patients as observed in other studies.8, 12

Only two species of Enterococcus, E. faecium and E. faecalis were isolated in our study which were comparable with other studies.6, 11, 13 In our study we observed E. faecalis to be predominant isolate when compared to faecium as seen in similar studies.7, 8, 14, 15, 16, 17

In the present study maximum resistance were noted to Penicillin-G, similar pattern were observed in the study conducted by Jain S et al., Thapa B et al., Trupti B et al and Devi PS et al.,

Our study showed all the isolates were sensitive to linezolid when compared with other studies.6

Conclusion

This study illustrates the prevalence and antibiotic pattern of Enterococci isolated from the patients in our region. We observed that linezolid resistant strains have not emerged during our study period in our region. Emerging drug resistance to Enterococcus acts as a reason to work on its antibiogram that can help us to formulate antibiotic policy for management of Enterococcal infection and helpful to the clinicians for empiric therapy.

Source of Funding

None.

Conflict of Interest

None.

References

1 

G Mandell J Bennett R Dolin Principles and Practice of Infectious Disease6th ed.Elsevier2005

2 

P R Murray Manual of Clinical Microbiology9th ed.20074304

3 

S Jain A Kumar B Kashyap R I Kaur The clinicoepidemiological profile and the high level aminoglycoside resistance in Enterococcal septicemia at a tertiary care hospital in east DelhiInt J App Basic Med Res201112803

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Performance standards for antimicrobial susceptibility testing; twentyfifth Informational supplement. CLSI Document M100- S25 WaynePA2015725

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Nosocomial Enterococci resistant to vancomycin): United States, 1989-1993: National Nosocomial Infection SurveilanceMorb Mortal Wkly Rep199342305979

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K N Prasad A Tripathi S K Shukla A Singh Prevalence, outcome and risk factor associated with vancomycin-resistant Enterococcus faecalis and Enterococcus faecium at a Tertiary Care Hospital in Northern IndiaIndian J Med Microbiol20163413845

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R S Shinde S Oommen G V Koppikar Characterization and antimicrobial susceptibility pattern of clinical isolates of Enterococci at a tertiary care hospital in Mumbai, IndiaAnn Trop Med Public Health20125285

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S Palanisamy S Karunakaran S Narayanan Antimicrobial resistance profile and characterisation of enterococcus species from various clinical samples in a Tertiary care hospitalInt J Med Res Health Sci20132332833

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B Thapa U Tattawasart A Manjai Y Chantarasuk Antimicrobial Resistance and Species Prevalence of Enterococcal Isolates in Srinagarind Hospital, Northeastern ThailandKhon Kaen Univ J (Grad Stud)20077497108

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A Peter S Zacharia E K Radhakrishnan J Mathew Antimicrobial resistance trends with special reference to vancomycin resistance among different species of EnterococciInt J Pharm Bio Sci20134135663

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P Srivastava R Mehta P S Nirwan M Sharma S S Dahiya Prevalence and antimicrobial susceptibility of enterococcus species isolated from different clinical samples in a tertiary care hospital of north IndiaNational J Med Res20133438991

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S Ali I A Mirza S Yaqoob A Hussain I Khan M Y Rafiq Antimicrobial susceptibility pattern of Enterococcus species isolated from patients with urinary tract infectionGomal J Med Sci2014121114

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S Bose K A Ghosh R Barapatre Prevalence of drug resistance among enterococcus species isolated from a tertiary care hospitalInt J med and health sci2012133844

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P J Desai D Pandit M Mathur G A Prevalence Identification and distribution of various species of enterococci isolated from clinical specimens with special reference to urinary tract infection in catheterized patientsIndian J Med Microbiol20011931327

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S Sreeja S P R Babu A G Prathab The Prevalence and the Characterization of the Enterococcus Species from Various Clinical Samples in a Tertiary Care HospitalJ Clin Diagn Res20126914868

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L Shah S Mulla Patel Kg S Rewadiwala Prevalence of Enterococci with higher resistance level in a tertiary care hospital: a Matter of concernNational J Med Res201221257

17 

P S Devi P S Rao P G Shivananda Characterization, antibiotic susceptibility pattern and detection of betalactamases in EnterococciIndian J Pathol Microbiol20024517982



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